大阪大学大学院 生命機能研究科
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英語の論文／総説／著書
2023Hirano Y, Ohno Y, Kubota Y, Fukagawa T, Kihara A, Haraguchi T, Hiraoka Y. (2023)
Ceramide synthase homolog Tlc4 maintains nuclear evelope integirty via its Golgi translocation.
J. Cell Sci., 136 (10): jcs260923, doi:10.1242/jcs.260923
Watabe M, Hirano Y, Iwane A, Matoba O, Takahashi K. (2023)
Optical dispersions through intracellular inhomogeneities
Phys. Rev. Res., Mar 31 Online ahead of print
Hirano Y, Kinugasa Y, Kubota Y, Obuse C, Haraguchi T, Hiraoka Y. (2023)
Inner nuclear membrane proteins Lem2 and Bqt4 interact with different lipid synthesis enzymes in fission yeast.
J Biochem., Feb 17:mvad017. doi: 10.1093/jb/mvad017
2022
Yang HJ, Asakawa H, Li FA, Haraguchi T, Shih HM, Hiraoka Y. (2022)
A nuclear pore complex-associated regulation of SUMOylation in meiosis.
Genes Cells., Dec 23. doi: 10.1111/gtc.13003
Tsuchiya M, Kong W, Hiraoka Y, Haraguchi T, Ogawa H. (2022)
TBK1 inhibitors enhance transfection efficiency by suppressing p62/SQSTM1 phosphorylation.
Genes Cells., doi: 10.1111/gtc.12987
Martín Caballero L, Capella M, Barrales RR, Dobrev N, van Emden T, Hirano Y, Suma Sreechakram VN, Fischer-Burkart S, Kinugasa Y, Nevers A, Rougemaille M, Sinning I, Fischer T, Hiraoka Y, Braun S. (2022)
The inner nuclear membrane protein Lem2 coordinates RNA degradation at the nuclear periphery.
Nat Struct Mol Biol., 29:910-921. doi: 10.1038/s41594-022-00831-6.
(bioRxiv, doi: 10.1101/2021.05.30.446327)
Asakawa H, Hirano Y, Shindo T, Haraguchi T, Hiraoka Y.（2022）
Fission yeast Ish1 and Les1 interact with each other in the lumen of the nuclear envelope.
Genes Cells., 27:643-656. doi: 10.1111/gtc.12981.
Hiraoka H, Wang J, Nakano T, Hirano Y, Yamazaki S, Hiraoka Y, Haraguchi T. (2022)
ATP levels influence cell movement during the mound phase in Dictyostelium discoideum as revealed by ATP visualization and simulation.
FEBS Open Bio., 12:2042-2056. doi: 10.1002/2211-5463.13480.
Asakawa H, Hirano Y, Haraguchi T. (2022)
Organelles: Structure and function - Nuclear Organization (Nuclear Structure and Dynamics)
Reference Module in Life Sciences (Encyclopedia of Cell Biology, 2nd Edition)
https://doi.org/10.1016/B978-0-12-821618-7.00152-8
Haraguchi T, Osakada H, Iwamoto M. (2022)
Live CLEM Imaging of Tetrahymena to Analyze the Dynamic Behavior of the Nuclear Pore Complex
Methods Mol Biol., 2502:473-492. doi: 10.1007/978-1-0716-2337-4_30
Sakuno T, Tashiro S, Tanizawa H, Iwasaki O, Ding DQ, Haraguchi T, Noma KI, Hiraoka Y. (2022)
Rec8 Cohesin-mediated Axis-loop chromatin architecture is required for meiotic recombination
Nucleic Acids Res., gkac183. doi: 10.1093/nar/gkac183
(bioRxiv, doi: 10.1101/2021.12.09.472021)
Matsumori H, Watanabe K, Tachiwana H, Ito Y, Matsumoto D, Tokunaga M, Sogawa K, Osakada H, Haraguchi T, Awatsu A, Ochiai H, Sakata Y, Toki T, Ito E, Ilya G. Goldberg I.G, Tokunaga K, Nakao M, Saitoh N. (2022)
Ribosomal protein L5 facilitates rDNA-bundled condensate and nucleolar assembly
Life Sci. Alliance, 23;5(7):e202101045. doi: 10.26508/lsa.202101045. PMID: 35321919
Sakuno T, Hiraoka Y. (2022)
Rec8 Cohesin: A Structural Platform for Shaping the Meiotic Chromosomes
Genes, 13(2), 200, doi:10.3390/genes13020200
Haraguchi T, Koujin T, Shindo T, Bilir Ş, Osakada H, Nishimura K, Hirano Y, Asakawa H, Mori C, Kobayashi S, Okada Y, Chikashige Y, Fukagawa T, Shibata S, Hiraoka Y. (2022)
Transfected plasmid DNA is incorporated into the nucleus via nuclear envelope reformation at telophase
Commun Biol., 5:78, doi: 10.1038/s42003-022-03021-8
Watanabe R, Hirano Y, Hara M, Hiraoka Y, Fukagawa T. (2022)
Mobility of kinetochore proteins measured by FRAP analysis in living cells
Chromosome Res., 30, 43–57, doi: 10.1007/s10577-021-09678-x
2021
Hayashi-Takanaka Y, Hayashi Y, Hirano Y, Miyawaki-Kuwakado A, Ohkawa Y, Obuse C, Kimura H, Haraguchi T, Hiraoka Y. （2021）
Chromatin loading of MCM hexamers is associated with di-/tri-methylation of histone H4K20 toward S phase entry.
Nucleic Acids Res., gkab1068, doi: 10.1093/nar/gkab1068
(bioRxiv: doi:10.1101/2021.05.14.443718)
Yadav RK, Matsuda A, Lowe BR, Hiraoka Y, Partridge JF. (2021)
Subtelomeric Chromatin in the Fission Yeast S. pombe
Microorganisms, doi: 10.3390/microorganisms9091977
Tsuchiya M, Ogawa H, Watanabe K, Koujin T, Mori C, Nunomura K, Lin B, Tani A, Hiraoka Y, Haraguchi T. (2021)
Microtubule inhibitors enhance DNA transfection efficiency by delaying p62-dependent ubiquitin recruitment
Genes Cells, 6(9):739-751. doi: 10.1111/gtc.12881. Epub 2021 Jul 27.
Ding DQ, Matsuda A, Okamasa K, Hiraoka Y. (2021)
The Linear Element is a Stable Structure Along the Chromosome Axis in Fission Yeast.
Chromosoma, 2021.04.07; doi: 10.1007/s00412-021-00757-w
Lowe BR, Yadav RK, Henry RA, Schreiner P, Matsuda A, Fernandez AG, Finkelstein D, Campbell M, Kallappagoudar S, Jablonowski CM, Andrews AJ, Hiraoka Y, Partridge JF. (2021)
Surprising phenotypic diversity of cancer-associated mutations of Gly 34 in the histone H3 tail.
eLife, 10:e65369. doi: 10.7554/eLife.65369
2020
Yang HJ, Asakawa H, Ohtsuki C, Haraguchi T, Hiraoka Y. (2020)
Transient breakage of the nucleocytoplasmic barrier controls spore maturation via mobilizing the proteasome subunit Rpn11 in the fission yeast Schizosaccharomyces pombe
Journal of Fungi, doi: 10.3390/jof6040242
Hirano Y, Asakawa H, Sakuno T, Haraguchi T, Hiraoka Y.(2020)
Nuclear Envelope Proteins Modulating the Heterochromatin Formation and Functions in Fission Yeast.
Cells. Aug 16;9(8):E1908. doi: 10.3390/cells9081908.
Matsuda A, Koujin T, Schermelleh L, Haraguchi T, Hiraoka Y. (2020)
High-Accuracy Correction of 3D Chromatic Shifts in the Age of Super-Resolution Biological Imaging Using Chromagnon.
J. Vis. Exp., (160), e60800, doi:10.3791/60800
Journal Page
Hirano Y, Kinugasa Y, Osakada H, Shindo T, Kubota Y, Shibata S, Haraguchi T, Hiraoka Y.(2020)
Lem2 and Lnp1 maintain the membrane boundary between the nuclear envelope and endoplasmic reticulum.
Commun Biol., Jun 1, 3(1):276, doi: 10.1038/s42003-020-0999-9.
Hiraoka Y.(2020)
Phase separation drives pairing of homologous chromosomes.
Curr Genet., Apr 13, doi: 10.1007/s00294-020-01077-9. Online ahead of print.
Yamada T, Yamada S, Ding DQ, Fujita Y, Takaya E, Hiraoka Y, Murakami H, Ohta K.(2020)
Maintenance of meiotic crossover against reduced double-strand break formation in fission yeast lacking histone H2A.Z.
Gene., Jun 15, 743:144615, doi: 10.1016/j.gene.2020.144615. Epub 2020 Mar 25.
Yuzurihara H, Aizawa Y, Saotome M, Ichikawa Y, Yokoyama H, Chikashige Y, Haraguchi T, Hiraoka Y, Kurumizaka H, Kagawa W.(2020)
Improved Methods for Preparing the Telomere Tethering Complex Bqt1-Bqt2 for Structural Studies.
Protein J., Mar 6, doi: 10.1007/s10930-020-09887-z. [Epub ahead of print]
Hiraoka H, Nakano T, Kuwana S, Fukuzawa M, Hirano Y, Ueda M, Haraguchi T, Hiraoka Y.(2020)
Intracellular ATP levels influence cell fates in Dictyostelium discoideum differentiation.
Genes Cells., Mar 3, doi: 10.1111/gtc.12763. [Epub ahead of print]
Osemwenkhae OP, Sakuno T, Hirano Y, Asakawa H, Hayashi-Takanaka Y, Haraguchi T, Hiraoka Y. (2020)
Human Ebp1 rescues the synthetic lethal growth of fission yeast cells lacking Cdb4 and Nup184.
Genes Cells., First published: 12 February, doi: 10.1111/gtc.12757.
Nakano T, Okaie Y, Kinugasa Y, Koujin T, Suda T, Hiraoka Y, Haraguchi T.(2020)
Roles of Remote and Contact Forces in Epithelial Cell Structure Formation.
Biophys J., Feb 5. pii: S0006-3495(20)30112-0. doi: 10.1016/j.bpj.2020.01.037. [Epub ahead of print]
Murawska M, Schauer T, Matsuda A, Wilson MD, Pysik T, Wojcik F, Muir TW, Hiraoka Y, Straub T, Ladurner AG.(2020)
The Chaperone FACT and Histone H2B Ubiquitination Maintain S. pombe Genome Architecture through Genic and Subtelomeric Functions.
Mol Cell., Feb 6, 77(3):501-513.e7. doi: 10.1016/j.molcel.2019.11.016. Epub 2019 Dec 11.
2019
Ding DQ, Okamasa K, Katou Y, Oya E, Nakayama JI, Chikashige Y, Shirahige K, Haraguchi T, Hiraoka Y.(2019)
Chromosome-associated RNA-protein complexes promote pairing of homologous chromosomes during meiosis in Schizosaccharomyces pombe.
Nat Commun., Dec 6, 10(1):5598, doi: 10.1038/s41467-019-13609-0.
Teeli AS, Leszczyński P, Krishnaswamy N, Ogawa H, Tsuchiya M, Śmiech M, Skarzynski D, Taniguchi H. (2019)
Possible Mechanisms for Maintenance and Regression of Corpus Luteum Through the Ubiquitin-Proteasome and Autophagy System Regulated by Transcriptional Factors.
Front Endocrinol (Lausanne)., Nov 19, 10:748. doi: 10.3389/fendo.2019.00748. eCollection 2019. Review.
Sorida M, Hirauchi T, Ishizaki H, Kaito W, Shimada A, Mori C, Chikashige Y, Hiraoka Y, Suzuki Y, Ohkawa Y, Kato H, Takahata S, Murakami Y.(2019)
Regulation of ectopic heterochromatin-mediated epigenetic diversification by the JmjC family protein Epe1.
PLoS Genet., Jun 17, 15(6):e1008129. doi: 10.1371/journal.pgen.1008129. eCollection 2019 Jun.
Nakano T, Okaie Y, Kobayashi S, Hara T, Hiraoka Y, Haraguchi T. (2019)
Methods and Applications of Mobile Molecular Communication Systems.
Proceedings of the IEEE, abstract.
Suzuki Y, Bilir S, Hatano Y, Fukuda T, Mashiko D, Kobayashi S, Hiraoka Y, Haraguchi T, Yamagata K. (2019)
Nuclear formation induced by DNA-conjugated beads in living fertilised mouse egg.
Sci Rep, Jun 11, 9:8461, doi: 10.1038/s41598-019-44941-6.
Asakawa H, Kojidani T, Yang HJ, Ohtsuki C, Osakada H, Matsuda A, Iwamoto M, Chikashige Y, Nagao K, Obuse C, Hiraoka Y, Haraguchi T. (2019)
Asymmetrical localization of Nup107-160 subcomplex components within the nuclear pore complex in fission yeast.
PLoS Genet, 15(6): e1008061, doi:10.1371/journal.pgen.1008061
Yamamoto TG, Ding DQ, Nagahama Y, Chikashige Y, Haraguchi T, Hiraoka Y.(2019)
Histone H2A insufficiency causes chromosomal segregation defects due to anaphase chromosome bridge formation at rDNA repeats in fission yeast.
Sci Rep, May 9, 9(1):7159. doi: 10.1038/s41598-019-43633-5.
Kinugasa Y, Hirano Y, Sawai M, Ohno Y, Shindo T, Asakawa H, Chikashige Y, Shibata S, Kihara A, Haraguchi T, Hiraoka Y.(2019)
Very-long-chain fatty acid elongase Elo2 rescues lethal defects associated with loss of the nuclear barrier function.
J Cell Sci, Apr 11, pii: jcs.229021. doi: 10.1242/jcs.229021. [Epub ahead of print]
Selected for "Research Highlights"
Kinugasa is introduced in ”First person", LINK
Kurokawa K, Osakada H, Kojidani T, Waga M, Suda Y, Asakawa H, Haraguchi T, Nakano A.(2019)
Visualization of secretory cargo transport within the Golgi apparatus.
J Cell Biol, doi: 10.1083/jcb.201807194. Published March 11, 2019
Bilir Ş, Kojidani T, Mori C, Osakada H, Kobayashi S, Koujin T, Hiraoka Y, Haraguchi T.(2019)
Roles of Nup133, Nup153, and membrane fenestrations in assembly of the nuclear pore complex at the end of mitosis.
Genes Cells., Feb 28, doi: 10.1111/gtc.12677. [Epub ahead of print]
Harada A, Maehara K, Handa T, Arimura Y, Nogami J, Hayashi-Takanaka Y, Shirahige K, Kurumizaka H, Kimura H, Ohkawa Y.(2019)
A chromatin integration labelling method enables epigenomic profiling with lower input.
Nat Cell Biol., Feb, 21(2):287-296, doi: 10.1038/s41556-018-0248-3. Epub 2018 Dec 10.
Hiraoka Y (2019)
Life in the light.
Nat Photon. 13.69-70, doi:10.1038/s41566-018-0343-9. Published 2019 Jan 24.
Iwamoto M, Fukuda Y, Osakada H, Mori C, Hiraoka Y, Haraguchi T. (2019)
Identification of the evolutionarily conserved nuclear envelope proteins Lem2 and MicLem2 in Tetrahymena thermophila.
Gene: X, 100006; doi:10.1016/j.gene.2019.100006. Published 2019 Jan 22.
Takao K, Takamiya K, Ding DQ, Haraguchi T, Hiraoka Y, Nishimori H, Awazu A. (2019)
Torsional Turning Motion of Chromosomes as an Accelerating Force to Align Homologous Chromosomes during Meiosis.
J Phys Soc Jpn, 88, 023801; doi: 10.7566/JPSJ.88.023801. Publised 2019 Jan 18.
2018
Ogawa S, Kido S, Handa T, Ogawa H, Asakawa H, Takahashi TS, Nakagawa T, Hiraoka Y, Masukata H.(2018)
Shelterin promotes tethering of late replication origins to telomeres for replication-timing control.
EMBO J, Aug 1, 37(15), pii: e98997, doi: 10.15252/embj.201898997. Epub 2018 Jul 11.
Iwamoto M, Mori C, Osakada H, Koujin T, Hiraoka Y, Haraguchi T.(2018)
Nuclear localization signal targeting to macronucleus and micronucleus in binucleated ciliate Tetrahymena thermophila.
Genes Cells, Jul, 3(7):568-579, doi: 10.1111/gtc.12602. Epub 2018 Jun 8.
Bao XX, Spanos C, Kojidani T, Lynch EM, Rappsilber J, Hiraoka Y, Haraguchi T, Sawin KE. (2018)
Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore.
eLife, May 29, 7:e33465, doi: 10.7554/eLife.33465
Matsuda A, Schermelleh L, Hirano Y, Haraguchi T, Hiraoka Y.(2018)
Accurate and fiducial-marker-free correction for three-dimensional chromatic shift in biological fluorescence microscopy.
Sci Rep, May 15, 8(1):7583, doi: 10.1038/s41598-018-25922-7.
Indroduced as "Top 100 most accessed papers in Cell and Molecular Biology"
Yamada S, Kugou K, Ding DQ, Fujita Y, Hiraoka Y, Murakami H, Ohta K, Yamada T.(2018)
The conserved histone variant H2A.Z illuminates meiotic recombination initiation.
Curr Genet, Oct, 64(5):1015-1019, doi: 10.1007/s00294-018-0825-9. Epub 2018 Mar 16.
Itoh G, Ikeda M, Iemura K, Amin MA, Kuriyama S, Tanaka M, Mizuno N, Osakada H, Haraguchi T, Tanaka K.(2018)
Lateral attachment of kinetochores to microtubules is enriched in prometaphase rosette and facilitates chromosome alignment and bi-orientation establishment.
Sci Rep, Mar 1, 8(1):3888, doi: 10.1038/s41598-018-22164-5.
Sparvoli D, Richardson E, Osakada H, Lan X, Iwamoto M, Bowman GR, Kontur C, Bourland WA, Lynn DH, Pritchard JK, Haraguchi T, Dacks JB, Turkewitz AP.(2018)
Remodeling the Specificity of an Endosomal CORVET Tether Underlies Formation of Regulated Secretory Vesicles in the Ciliate Tetrahymena thermophila.
Curr Biol, Feb 21, pii: S0960-9822(18)30080-0, doi: 10.1016/j.cub.2018.01.047. [Epub ahead of print]
Asakawa H, Hiraoka Y, Haraguchi T.(2018)
Estimation of GFP-Nucleoporin Amount Based on Fluorescence Microscopy.
Methods Mol Biol, 1721:105-115., doi: 10.1007/978-1-4939-7546-4_10. Epub 2018 Feb 9.
Tsuchiya M, Ogawa H, Koujin T, Mori C, Osakada H, Kobayashi S, Hiraoka Y, Haraguchi T.(2018)
p62/SQSTM1 promotes rapid ubiquitin conjugation to target proteins after endosome rupture during xenophagy.
FEBS Open Bio, Jan 23, doi: 10.1002/2211-5463.12385
Hirano Y, Kinugasa Y, Asakawa H, Chikashige Y, Obuse C, Haraguchi T, Hiraoka Y.(2018)
Lem2 is retained at the nuclear envelope through its interaction with Bqt4 in fission yeast.
Genes Cells, Mar, 23(3):122-135, doi: 10.1111/gtc.12557. Epub 2018 Jan 2.
(open access)
Top downloaded article 2017-2018 in this journal：a top 20 most read paper
2017
Kajitani T, Kato H, Chikashige Y, Tsutsumi C, Hiraoka Y, Kimura H, Ohkawa Y, Obuse C, Hermand D, Murakami Y.(2017)
Ser7 of RNAPII-CTD facilitates heterochromatin formation by linking ncRNA to RNAi.
Proc Natl Acad Sci U S A, Dec 26, 114(52):E11208-E11217, doi: 10.1073/pnas.1714579115. Epub 2017 Dec 13.
Yamada S, Kugou K, Ding DQ, Fujita Y, Hiraoka Y, Murakami H, Ohta K, Yamada T.(2017)
The histone variant H2A.Z promotes initiation of meiotic recombination in fission yeast.
Nucleic Acids Res, Epub Nov 14, 2018 Jan 25, 46(2):609-620, doi: 10.1093/nar/gkx1110.
Iwamoto M, Hiraoka Y, Haraguchi T.(2017)
Newly found Tetrahymena nucleoporins, Nup214, Nup153 and Pom121/Pom82, differentiate nuclear pore complexes of functionally distinct nuclei.
Commun Integrat Biol, Nov 3, e1384890, doi: 10.1080/19420889.2017.1384890
Asakawa H, Ding DQ, Haraguchi T, Hiraoka Y.(2017)
Microscopic Observation of Living Cells Stained with Fluorescent Probes.
Cold Spring Harb Protoc, Oct 3, 2017(10):pdb.prot079848. doi: 10.1101/pdb.prot079848.
Ding DQ, Hiraoka Y.(2017)
Visualization of a Specific Genome Locus by the lacO/LacI-GFP System.
Cold Spring Harb Protoc, Oct 3, 2017(10):pdb.prot091934. doi: 10.1101/pdb.prot091934.
Kraus F, Miron E, Demmerle J, Chitiashvili T, Budco A, Alle Q, Matsuda A, Leonhardt H, Schermelleh L, Markaki Y.(2017)
Quantitative 3D structured illumination microscopy of nuclear structures.
Nat Protoc, May, 12(5):1011-1028, doi: 10.1038/nprot.2017.020. Epub 2017 Apr 13.
Demmerle J, Innocent C, North AJ, Ball G, Müller M, Miron E, Matsuda A, Dobbie IM, Markaki Y, Schermelleh L.(2017)
Strategic and practical guidelines for successful structured illumination microscopy.
Nat Protoc, May, 12(5):988-1010, doi: 10.1038/nprot.2017.019. Epub 2017 Apr 13.
Yang HJ, Iwamoto M, Hiraoka Y, Haraguchi T.(2017)
Function of nuclear membrane proteins in shaping the nuclear envelope integrity during closed mitosis.
J Biochem, Jun 1, 161(6):471-477, First Published on April 8, doi: 10.1093/jb/mvx020.
Iwamoto M, Osakada H, Mori C, Fukuda Y, Nagao K, Obuse C, Hiraoka Y, Haraguchi T.(2017)
Compositionally distinct nuclear pore complexes of functionally distinct dimorphic nuclei in ciliate Tetrahymena.
J Cell Sci, May 15, 130(10):1822-1834. doi: 10.1242/jcs.199398. Epub 2017 Apr 6.
Kaur H, Sparvoli D, Osakada H, Iwamoto M, Haraguchi T, Turkewitz AP.(2017)
An endosomal syntaxin and the AP-3 complex are required for formation and maturation of candidate lysosome-related secretory organelles (mucocysts) in Tetrahymena thermophila.
Mol Biol Cell, Jun 1, 28(11):1551-1564. doi: 10.1091/mbc.E17-01-0018. Epub 2017 Apr 5.
Syu JS, Baba T, Huang JY, Ogawa H, Hsieh CH, Hu JX, Chen TY, Lin TC, Tsuchiya M, Morohashi K, Huang BM, Lu FI(2017)
Lysosomal activity maintains glycolysis and cyclin E1 expression by mediating Ad4BP/SF-1 stability for proper steroidogenic cell growth
Sci Rep, Mar 21, 7(1):240, doi: 10.1038/s41598-017-00393-4
Chikashige Y, Yamane M, Okamasa K, Osakada H, Tsutsumi C, Nagahama Y, Fukuta N, Haraguchi T, Hiraoka Y(2017)
Fission yeast APC/C activators Slp1 and Fzr1 sequentially trigger two consecutive nuclear divisions during meiosis.
FEBS Lett, Apr, 591(7):1029-1040, doi: 10.1002/1873-3468.12612. Epub 2017 Mar 17.
Yang HJ, Osakada H, Kojidani T, Haraguchi T, Hiraoka Y(2017)
Lipid droplet dynamics during Schizosaccharomyces pombe sporulation and their role in spore survival.
Biol Open, Feb 15, 6(2):217-222, doi: 10.1242/bio.022384
Matsuda A, Asakawa H, Haraguchi T, Hiraoka Y(2017)
Spatial organization of the Schizosaccharomyces pombe genome within the nucleus.
Yeast, Feb, 34(2):55-66, doi: 10.1002/yea.3217. Epub 2016 Nov 29.
Tsuchiya M, Karim MR, Matsumoto T, Ogawa H, Taniguchi H(2017)
A Protein Preparation Method for the High-throughput Identification of Proteins Interacting with a Nuclear Cofactor Using LC-MS/MS Analysis.
J Vis Exp, Jan 24, (119), doi: 10.3791/55077.
Koyama M, Nagakura W, Tanaka H, Kujirai T, Chikashige Y, Haraguchi T, Hiraoka Y, Kurumizaka H(2017)
In vitro reconstitution and biochemical analyses of the Schizosaccharomyces pombe nucleosome.
Biochem Biophys Res Commun, Jan 22, 482(4):896-901. doi: 10.1016/j.bbrc.2016.11.130.
2016
Hirai Y, Hirano Y, Matsuda A, Hiraoka Y, Honda T, Tomonaga K(2016)
Borna Disease Virus Assembles Porous Cage-like Viral Factories in the Nucleus.
J Biol Chem, Dec 9, 291(50):25789-25798. doi: 10.1074/jbc.M116.746396
Nakano T, Kobayashi S, Koujin T, Chan CH, Hsu YH, Okaie Y, Obuchi T, Hara T, Hiraoka Y, Haraguchi T(2016)
Leader-follower based target detection model for mobile molecular communication networks
Proc. of IEEE International Workshop on Signal Processing advances in Wireless Communications (SPAWC 2016), July3-6, doi: 10.1109/SPAWC.2016.7536831.
Rong M, Matsuda A, Hiraoka Y, Lee J (2016)
Meiotic cohesin subunits RAD21L and REC8 are positioned at distinct regions between lateral elements and transverse filaments in the synaptonemal complex of mouse spermatocytes.
J Reprod Dev, Dec 20, 62(6):623-630, doi: 10.1262/jrd.2016-127. Epub 2016 Sep 26.
Asakawa H, Ding DQ, Haraguchi T, Hiraoka Y (2016)
Microscopic Observation of Living Cells Stained with Fluorescent Probes.
Fission Yeast: A Laboratory Manual (Edited by Iain Hagan, Antony Carr, Agnes Grallert and Paul Nurse, Cold Spring Harbor Laboratory Press), Aug 17, 230-235.
Ding DQ, Hiraoka Y (2016)
Visualization of a Specific Genome Locus by the lacO/Lacl-GFP System.
Fission Yeast: A Laboratory Manual (Edited by Iain Hagan, Antony Carr, Agnes Grallert and Paul Nurse, Cold Spring Harbor Laboratory Press), Aug 17, 236-241.
Sato Y, Kujirai T, Arai R, Asakawa H, Ohtsuki C, Horikoshi N, Yamagata K, Ueda J, Nagase T, Haraguchi T, Hiraoka Y, Kimura A, Kurumizaka H, Kimura H.(2016)
A Genetically Encoded Probe for Live-Cell Imaging of H4K20 Monomethylation.
J Mol Biol, Oct 9, 428(20):3885-3902, doi: 10.1016/j.jmb.2016.08.010. Epub 2016 Aug 14.
Kobayashi S, Iwamoto M, Haraguchi T. (2016)
Live correlative light-electron microscopy to observe molecular dynamics in high resolution.
Microscopy (Oxf), Aug, 65(4):296-308, doi: 10.1093/jmicro/dfw024. Epub 2016 Jul 6.
Gómez-Saldivar G, Fernandez A, Hirano Y, Mauro M, Lai A, Ayuso C, Haraguchi T, Hiraoka Y, Piano F, Askjaer P. (2016)
Identification of Conserved MEL-28/ELYS Domains with Essential Roles in Nuclear Assembly and Chromosome Segregation.
PLoS Genet, Jun 24, 12(6):e1006131, doi: 10.1371/journal.pgen.1006131.
Tange Y, Chikashige Y, Takahata S, Kawakami K, Higashi M, Mori C, Kojidani T, Hirano Y, Asakawa H, Murakami Y, Haraguchi T, Hiraoka Y. (2016)
Inner nuclear membrane protein Lem2 augments heterochromatin formation in response to nutritional conditions.
Genes Cells, Jun 23, 21(8):812-32, doi: 10.1111/gtc.12385
Tsuchiya M, Ogawa H, Koujin T, Kobayashi S, Mori C, Hiraoka Y, Haraguchi T. (2016)
Depletion of autophagy receptor p62/SQSTM1 enhances the efficiency of gene delivery in mammalian cells.
FEBS Lett, Jun 18, 590(16):2671-80, doi: 10.1002/1873-3468.12262.
Matsumura S, Kojidani T, Kamioka Y, Uchida S, Haraguchi T, Kimura A, Toyoshima F.（2016）
Interphase adhesion geometry is transmitted to an internal regulator for spindle orientation via caveolin-1.
Nat Commun, Jun 13, 7:ncomms11858, doi: 10.1038/ncomms11858.
Nakamura R, Koshiba-Takeuchi K, Tsuchiya M, Kojima M, Miyazawa A, Ito K, Ogawa H, Takeuchi JK.（2016）
Expression analysis of Baf60c during heart regeneration in axolotls and neonatal mice.
Dev Growth Differ, May, 58(4):367-382, doi: 10.1111/dgd.12281. Epub 2016 Apr 29.
Iwamoto M, Hiraoka Y, Haraguchi T（2016）
Uniquely designed nuclear structures of lower eukaryotes.
Curr Opin Cell Biol, Mar 7, 40:66-73, doi: 10.1016/j.ceb.2016.02.019
Ding DQ, Haraguchi T, Hiraoka Y（2016）
A cohesin-based structural platform supporting homologous chromosome pairing in meiosis.
Curr Genet, Feb 8, doi: 10.1007/s00294-016-0570-x
Asakawa H, Yang HJ, Hiraoka Y, Haraguchi T (2016)
Virtual nuclear envelope breakdown and its regulators in fission yeast meiosis.
Front. Cell Dev. Biol, Jan 15, 4:5, doi: 10.3389/fcell.2016.00005
Tashiro S, Handa T,Matsuda A, Ban T, Takigawa T, Miyasato K, Ishii K, Kazuto Kugou K, Kunihiro Ohta K, Hiraoka Y, Masukata H, Kanoh J（2016)
Shugoshin forms a specialized chromatin domain at subtelomeres that regulates transcription and replication timing.
Nat Commun, Jan, 7:10393, doi:10.1038/ncomms10393
Suzuki S, Kato H, Suzuki Y, Chikashige Y, Hiraoka Y, Kimura H, Nagao K, Obuse C, Takahata S, Murakami Y (2016)
Histone H3K36 trimethylation is essential for multiple silencing mechanisms in fission yeast.
Nucleic Acids Res, May 19, Epub Jan 20, 44(9):4147-4162, doi: 10.1093/nar/gkw008
Yang HJ, Haraguchi T, Hiraoka Y（2016)
A nucleoporin that facilitates meiotic kinetochore reorganization.
Cell Cycle, Jan 4, 0, doi: 10.1080/15384101.2015.1125237
Ding DQ, Matsuda A, Okamasa K, Nagahama Y, Haraguchi T, Hiraoka Y (2016)
Meiotic cohesin-based chromosome structure is essential for homologous chromosome pairing in Schizosaccharomyces pombe.
Chromosoma, Advanced Online publication Oct 28 2015, Jun, 125(2):205-214, doi:10.1007/s00412-015-0551-8
2015
Ohtsuki T, Miki S, Kobayashi S, Haraguchi T, Nakata E, Hirakawa K, Sumita K, Watanabe K, Okazaki S.(2015)
The molecular mechanism of photochemical internalization of cell penetrating peptide-cargo-photosensitizer conjugates.
Sci Rep, Dec 21, 5:18577, doi: 10.1038/srep18577
Yamamoto J, Oura M, Yamashita T, Miki S, Jin T, Haraguchi T, Hiraoka Y, Terai H, Kinjo M (2015)
Rotational diffusion measurements using polarization-dependent fluorescence correlation spectroscopy based on superconducting nanowire single-photon detector.
Opt Express, Dec 10, 23(25):32633-32642, doi: 10.1364/OE.23.032633
Chikashige Y, Arakawa S, Leibnitz K, Tsutsumi C, Mori C, Osakada H, Murata M, Haraguchi T, Hiraoka Y (2015)
Cellular economy in fission yeast cells continuously cultured with limited nitrogen resources.
Sci Rep, Oct 21, 5:15617, doi:10.1038/srep15617
Yang HJ, Asakawa H, Haraguchi T, Hiraoka Y. (2015)
Nup132 modulates meiotic spindle attachment in fission yeast by regulating kinetochore assembly.
J Cell Biol, Oct 26, 211(2):295-308, doi: 10.1083/jcb.201501035
Asakawa H, Yamamoto T. G, Hiraoka Y. (2015)
Fission yeast meets a legend in Kobe: report of the Eighth International Fission Yeast Meeting.
Genes Cells, Article first published online: 19 Oct, 20:967-971, doi:10.1111/gtc.12307
Tsuchiya M, Isogai S, Taniguchi H, Tochio H, Shirakawa M, Morohashi K, Hiraoka Y, Haraguchi T, Ogawa H. (2015)
Selective autophagic receptor p62 regulates the abundance of transcriptional coregulator ARIP4 during nutrient starvation.
Sci Rep, Sep 28, 5:14498, doi: 10.1038/srep14498
Iwamoto M, Hiraoka Y, Haraguchi H.（2015）
The nuclear pore complex acts as a master switch for nuclear and cell differentiation.
Commun Integr Biol, Aug 31, 8(4): e1056950, doi:10.1080/19420889.2015.1056950
Ruan K, Yamamoto TG, Asakawa H, Chikashige Y, Kimura H, Masukata H, Haraguchi T, Hiraoka Y. (2015)
Histone H4 acetylation required for chromatin decompaction during DNA replication.
Sci Rep, July 30, 5:12720, doi:10.1038/srep12720
Matsuda A, Chikashige Y, Ding DQ, Ohtsuki C, Mori C, Asakawa H, Kimura H, Haraguchi T, Hiraoka Y. (2015)
Highly condensed chromatins are formed adjacent to subtelomeric and decondensed silent chromatin in fission yeast.
Nat Commun, Jul 24, 6:7753, doi: 10.1038/ncomms8753
Poonperm R, Takata H, Hamano T, Matsuda A, Uchiyama S, Hiraoka Y, Fukui K. (2015)
Chromosome Scaffold is a Double-Stranded Assembly of Scaffold Proteins.
Sci Rep, Jul 1, 5:11916, doi: 10.1038/srep11916
Hirano Y, Matsuda A, Hiraoka Y. (2015)
Recent advancements in structured-illumination microscopy toward live-cell imaging.
Microscopy (Oxf), Aug, 64(4):237-249, doi: 10.1093/jmicro/dfv034, Epub 2015 Jun 30.
Asakawa H, Mori C, Ohtsuki C, Iwamoto M, Hiraoka Y, Haraguchi T. (2015)
Uncleavable Nup98-Nup96 is functional in fission yeast.
FEBS Open Bio, Jun 12, 5:508-514, doi: 10.1016/j.fob.2015.06.004. eCollection 2015.
http://www.sciencedirect.com/science/article/pii/S2211546315000583
Kobayashi S, Koujin T, Kojidani T, Osakada H, Mori C, Hiraoka Y, Haraguchi T, (2015)
BAF is a cytosolic DNA sensor that leads to exogenous DNA avoiding autophagy.
Proc Natl Acad Sci U S A, Jun 2, 112(22):7027-7032, doi: 10.1073/pnas.1501235112, Epub 2015 May 19.
Iwamoto M, Koujin T, Osakada H, Mori C, Kojidani T, Matsuda A, Asakawa H, Hiraoka Y, Haraguchi T. (2015)
Biased assembly of the nuclear pore complex is required for somatic and germline nuclear differentiation in Tetrahymena
J Cell Sci, Advance Online Article March 18, 128(9):1812-1823, doi:10.1242/jcs.167353
Ozaki K, Chikashige Y, Hiraoka Y, Matsumoto T. (2015)
Fission Yeast Scp3 Potentially Maintains Microtubule Orientation through Bundling.
PLoS One, Mar 13, 10(3):e0120109. doi: 10.1371/journal.pone.0120109
Liu NA, Sun J, Kono K, Horikoshi Y, Ikura T, Tong X, Haraguchi T, Tashiro S.(2015)
Regulation of homologous recombinational repair by lamin B1 in radiation-induced DNA damage.
FASEB J, Jun, 29(6):2514-25, doi: 10.1096/fj.14-265546, Epub 2015 Mar 2.
Ruan K, Yamamoto TG, Asakawa H, Chikashige Y, Masukata H, Haraguchi T,Hiraoka Y. (2015)
Meiotic nuclear movements in fission yeast are regulated by the transcription factor Mei4 downstream of a Cds1-dependent replication checkpoint pathway.
Genes Cells, 20:160-172, Epub Dec 10, doi: 10.1111/gtc.12207
Haraguchi T, Osakada H, Koujin T. (2015)
Live CLEM Imaging to Analyze Nuclear Structures at High Resolution.
Methods Mol Biol, 1262:89-103. doi: 10.1007/978-1-4939-2253-6_6
2014
Nakano T, Kobayashi S, Suda T, Okaie Y, Hiraoka Y, Haraguchi T.(2014)
Externally Controllable Molecular Communication Systems
IEEE Journal of Selected Areas in Communications, Vol 32, No 12, pp2417-2431.
Yamashita T, Liu D, Miki S, Yamamoto J, Haraguchi T, Kinjo M, Hiraoka Y, Wang Z, Terai H.(2014)
Fluorescence correlation spectroscopy with visible-wavelength superconducting nanowire single-photon detector.
Optics Express, 22(23): 28783–28789.
Nakano T, Kobayashi S, Suda T, Okaie Y, Hiraoka Y, Haraguchi T.(2014)
Externally Controllable Molecular Communication Systems for Pattern Formation.
ACM NANOCOM 2014 Proceedings, No. 14, doi:10.1145/2619955.2619971
Chikashige Y, Yamane M, Okamasa K, Mori C, Fukuta N, Matsuda A, Haraguchi T, Hiraoka Y.(2014)
Chromosomes rein back the spindle pole body during horsetail movement in fission yeast meiosis.
Cell Struct Funct. 39: 93-100. Epub 2014 Jun 20.
Kuramoto K, Sakai F, Yoshinori N, Nakamura TY, Wakabayashi S, Kojidani T, Haraguchi T, Hirose F, Osumi T.(2014)
Deficiency of a lipid droplet protein, Perilipin 5, suppresses myocardial lipid accumulation, thereby preventing type 1 diabetes-induced heart malfunction.
Mol Cell Biol, 34 (14): 2721-2731, May 12. [Epub ahead of print]
Asakawa H, Yang HJ, Yamamoto TG, Ohtsuki C, Chikashige Y, Sakata-Sogawa K, Tokunaga M, Iwamoto M, Hiraoka Y, Haraguchi T. (2014)
Characterization of nuclear pore complex components in fission yeast Schizosaccharomyces pombe.
Nucleus, 5(2):149-162. doi: 10.4161/nucl.28487
Asakawa H, Hiraoka Y, Haraguchi T. (2014)
A method of correlative light and electron microcopy for yeast cells
Micron, 61: 53-61. doi.org/10.1016/j.micron.2014.02.007
Oana H, Nishikawa K, Matsuhara H, Yamamoto A, Yamamoto TG, Haraguchi T, Hiraoka Y, Washizu M. (2014)
Non-destructive handling of individual chromatin fibers isolated from single cells in a microfluidic device utilizing an optically driven microtool.
Lab on a Chip, 14(4): 696-704.
2013
Davidson PM, Haraguchi T, Koujin T, Steinberg T, Tomakidi P, Hiraoka Y, Anselme K, Reiter G. (2013)
Severe Deformations of Malignant Bone and Skin Cells, as well as Aged Cells, on Micropatterned Surfaces.
Chapter 16 in a book “Biomaterials Surface Science” Edited by Andreas Taubert, Joäo F. Mano, J. Carlos Rodríguez-Cabello. July 24, 2013, Wiley https://onlinelibrary.wiley.com/doi/10.1002/9783527649600.ch16
Miyabayashi K, Katoh-Fukui Y, Ogawa H, Baba T, Shima Y, Sugiyama N, Kitamura K, Morohashi K. (2013)
Aristaless related homeobox gene, Arx, is implicated in mouse fetal Leydig cell differentiation possibly through expressing in the progenitor cells.
PLoS One, Jun 28;8(6):e68050. doi: 10.1371/journal.pone.0068050.
Iwamoto M, Mori C, Hiraoka Y, Haraguchi T (2013)
Puromycin resistance gene as an effective selection marker for ciliate Tetrahymena
Gene 534: 249-255.
http://www.sciencedirect.com/science/article/pii/S0378111913014583
Ding DQ, Haraguchi T, Hiraoka Y.(2013)
The role of chromosomal retention of noncoding RNA in meiosis.
Chromosome Res, Dec;21(6-7):665-672. doi: 10.1007/s10577-013-9389-1.
Fujita N, Morita E, Itoh T, Tanaka A, Nakaoka M, Osada Y, Umemoto T, Saitoh T, Nakatogawa H, Kobayashi S, Haraguchi T, Guan J-L, Iwai K, Tokunaga F, Saito K, Ishibashi K, Akira S, Fukuda M, Noda T, Yoshimori T. (2013)
Recruitment of the autophagic machinery to endosomes during infection is mediated by ubiquitin
J. Cell Biol,, 203(1): 115-128. jcb.201304188. Published October 7, 2013, doi:10.1083/jcb.201304188
Tadashi Nakano, Andrew W. Eckford, Tokuko Haraguchi (2013)
Molecular Communication
Cambridge University Press, 2013 Sep. 12
Oya E, Kato H, Chikashige Y, Tsutsumi C, Hiraoka Y, Murakami Y. (2013)
Mediator Directs Co-transcriptional Heterochromatin Assembly by RNA Interference-Dependent and -Independent Pathways
PLoS Genet,, Aug;9(8):e1003677. doi: 10.1371/journal.pgen.1003677. Epub 2013 Aug 15.
Sato Y, Mukai M, Ueda J, Muraki M, Stasevich TJ, Horikoshi N, Kujirai T, Kita H, Kimura T, Hira S, Okada Y, Hayashi-Takanaka Y, Obuse C, Kurumizaka H, Kawahara A, Yamagata K, Nozaki N, and Kimura H. (2013)
Genetically encoded system to track histone modification in vivo.
Sci Rep 3;2436.
Sadaie M, Salma R, Carroll T, Tomimatsu K, Chandra T, Young AR, Narita M, Pérez-Mancera, Bennett DC, Chong H, Kimura H, and *Narita M. (2013)
Uneven alterations in the lamin B1 genomic profile regulate heterochromatin formation and gene expression during senescence.
Genes Dev, 27, 1800-1808.
Dinant C, Ampatziadis-Michailidis G, Lans H, Tresini M, Lagarou A, Grosbart M, Theil A, van Cappellen WA, Kimura H, Bartek J, Fousteri M, *Houtsmuller AB, *Vermeulen W, and *Marteijn JA. (2013)
Enhanced chromatin dynamics by FACT promotes transcriptional restart after UV-induced DNA damage.
Mol Cell, 51, 469-479.
Eberhart A, Feodorova Y, Song C, Wanner G, Kiseleva E, Furukawa T, Kimura H, Schotta G, Leonhardt H, Joffe B, and *Solovei I. (2013)
Epigenetics of eu- and heterochromatin in inverted and conventional nuclei from mouse retina.
Chromosome Res, 21, 535-554.
Muramatsu D, Singh PB, Kimura H, Tachibana M, and *Shinkai Y. (2013)
Pericentric heterochromatin generated by HP1 interaction-defective histone methyltransferase Suv39h1.
J Biol Chem, 288, 25285-25296.
Yokoyama Y, *Hieda M, Nishioka Y, Matsumoto A, Higashi S, Kimura H, Yamamoto H, Mori M, Matsuura S, and Matsuura N. (2013)
Cancer associated up-regulation of H3K9 trimethylation promotes cell motility in vitro and drives tumor formation in vivo.
Cancer Sci, 104, 889-895.
Kimura H.
Histone modifications for human epigenome analysis.
J Hum Genet, 58, 439-445.
Nozawa RS, Nagao K, Igami K, Shibata S, Shirai N, Nozaki N, Sado T, Kimura H, and *Obuse C. (2013)
Human inactive X chromosome is compacted through a PRC2-independent SMCHD1–HBiX1 pathway.
Nature Struct Mol Biol, 20, 566-573.
Iwamoto M, Asakawa H, Ohtsuki C, Osakada H, Koujin T, Hiraoka Y, Haraguchi T. (2013)
Monoclonal Antibodies Recognize Gly-Leu-Phe-Gly Repeat of Nucleoporin Nup98 of Tetrahymena, Yeasts and Humans
Monoclonal Antibodies in Immunodiagnosis and Immunotherapy, 32(2): 81-90.
Selected for "Highlighted Articles"
Haraguchi T. (2013)
13C2 Anti-Nup98
Monoclonal Antibodies in Immunodiagnosis and Immunotherapy, 32(2): 141-141.
Haraguchi T. (2013)
21A10 Anti-Nup98
Monoclonal Antibodies in Immunodiagnosis and Immunotherapy, 32(2): 142-142.
Hamasaki M, Furuta N, Matsuda A, Nezu A, Yamamoto A, Fujita N, Oomori H, Noda T, Haraguchi T, Hiraoka Y, Amano A, Yoshimori T.(2013)
Autophagosomes form at ER-mitochondria contact sites.
Nature, 495, 389-393.
Yoshida M, Katsuyama S, Tateho K, Nakamura H, Miyoshi J, Ohba T, Matsuhara H, Miki F, Okazaki K, Haraguchi T, Niwa O, Hiraoka Y, Yamamoto A. (2013)
Microtubule-organizing center formation at telomeres induces meiotic telomere clustering.
J. Cell Biol, 200(4): 385-395.
Ichikawa Y, Kagawa W, Saito K, Chikashige Y, Haraguchi T, Hiraoka Y, Kurumizaka H. (2013)
Purification and characterization of the fission yeast telomere clustering factors, Bqt1 and Bqt2.
Protein Expr Purif, 88(2): 207-213.
2012
Ding, D.-Q., Haraguchi, T., Hiraoka, Y.(2012)
Chromosomally-retained RNA mediates homologous pairing
Nucleus, 3(6): 516-519.
Hashimoto T, Segawa H, Okuno M, Kano H, Hamaguchi HO, Haraguchi T, Hiraoka Y, Hasui S, Yamaguchi T, Hirose F, Osumi T.(2012)
Active involvement of micro-lipid droplets and lipid droplet-associated proteins in hormone-stimulated lipolysis in adipocytes.
J Cell Sci, 125(24):6127-36.
Asakawa H, Hiraoka Y, Haraguchi T.(2012)
Live CLEM imaging: an application for yeast cells
In "Current microscopy contributions to advances in science and technology", vol. 1; 478-485. A. Méndez-Vilas (Ed.) abstract
Hirano Y, Hizume K, Kimura H, Takeyasu K, Haraguchi T, Hiraoka Y.(2012)
Lamin B receptor recognizes specific modification of histone H4 in heterochromatin formation.
J. Biol. Chem, 287(51): 42654-42663.
Fujita I, Nishihara Y, Tanaka M, Tsujii H, Chikashige Y, Watanabe Y, Saito M, Ishikawa F, Hiraoka Y, Kanoh J.(2012).
Telomere-Nuclear Envelope Dissociation Promoted by Rap1 Phosphorylation Ensures Faithful Chromosome Segregation.
Curr. Biol, 22, 1932-1937.
Vielle A, Lang J, Dong Y, Ercan S, Kotwaliwale C, Rechtsteiner A, Appert A, Chen QB, Dose A, Egelhofer T, Kimura H, Stempor P, Dernburg A, Lieb JD, Strome S, and *Ahringer J. (2012).
H4K20me1 Contributes to Downregulation of X-Linked Genes for C. elegans Dosage Compensation.
PLoS Genet, 8, e1002933.
Karmodiya K, Krebs AR, Oulad-Abdelghani M, Kimura H, and *Tora L. (2012).
H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells.
BMC Genomics, 13, 424.
Sato K, Ishiai M, Toda K, Furukoshi S, Osakabe A, Tachiwana H, Takizawa Y, Kagawa W, Kitao H, Dohmae N, Obuse C, Kimura H, *Takata M, and *Kurumizaka H. (2012).
Histone chaperone activity of Fanconi anemia proteins, FANCD2 and FANCI, is required for DNA crosslink repair.
EMBO J, 31, 3524-3536.
Chandra T, Kirschner K, Thuret JY, Pope BD, Ryba T, Newman S, Ahmed K, Samarajiwa SA, Salama R, Carroll T, Stark R, Janky R, Narita M, Xue L, Chicas A, Nũnez S, Janknecht R, Hayashi-Takanaka Y, Wilson MD, Marshall A, Odom DT, Babu MM, Bazett-Jones DP, Tavaré S, Edwards PA, Lowe SW, Kimura H, Gilbert DM, and *Narita M. (2012).
Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation.
Mol Cell, 47, 203-214.
Katayama T, Kobayashi H, Okamura T, Yamasaki-Katayama Y, Kibayashi T, Kimura H, Ohsawa K, Kohsaka S, and *Minami M. (2012).
Accumulating Microglia Phagocytose Injured Neurons in Hippocampal Slice Cultures: Involvement of p38 MAP Kinase.
PLoS One, 7, e40813.
Kim J-M, To TK, Ishida J, Matsui A, Kimura H, *Seki M. (2012).
Transition of Chromatin Status During The Recovery Process from Drought Stress in Arabidopsis thaliana.
Plant Cell Physiol, 53, 847-856.
Ohzeki J-i, Bergmann JH, Kouprina N, Noskov VN, Nakano M, Kimura H, Earnshaw WC, Larionov V, and *Masumoto H. (2012).
Breaking the HAC Barrier: Histone H3K9 acetyl/methyl balance regulates CENP-A assembly.
EMBO J, 31, 2391-2402.
Yoshie Tange, Atsushi Kurabayashi, Bunshiro Goto, Kwang-Lae Hoe, Dong-Uk Kim, Han-Oh Park, Jacqueline Hayles, Yuji Chikashige, Chihiro Tsutumi, Yasushi Hiraoka, Fumiaki Yamao, Paul Nurse, and Osami Niwa.(2012)
The CCR4-NOT Complex Is Implicated in the Viability of Aneuploid Yeasts.
PLoS Genetics, 2012 Jun;8(6):e1002776. Epub 2012 Jun 21.
Ding DQ , Okamasa K, Yamane M, Tsutsumi C, Haraguchi T, Yamamoto M, and Hiraoka Y. (2012)
Meiosis-specific non-coding RNA mediates robust pairing of homologous chromosomes in meiosis.
Science, 336(6082): 732-736.
Ushijima Y, Inoue YH, Konishi T, Kitazawa D, Yoshida H, Shimaji K, Kimura H, and *Yamaguchi M. (2012)
Roles of histone H3K9 methyltransferases during Drosophila spermatogenesis.
Chromosome Res, 20, 319-331.
Yamashita A, Shichino Y, Tanaka H, Hiriart E, Touat-Todeschini L, Vavasseur A, Ding DQ, Hiraoka Y, Verdel A, and Yamamoto M. (2012)
Hexanucleotide motifs mediate recruitment of the RNA elimination machinery to silent meiotic genes
Open Biology, Mar 21; 2:120014
Kobayashi S, Hattori Y, Osakada H, Toma K, Maitani Y, Hiraoka Y, Haraguchi T. (2012)
Early entry and deformation of macropinosomes correlates with high efficiency of decaarginine-PEG-lipid-mediated gene delivery.
J Gene Med, 14, 262-271.
Hirose H, Takeuchi T, Osakada H, Pujals S, Katayama S, Nakase I, Kobayashi S, Haraguchi T, Futaki S. (2012)
Transient Focal Membrane Deformation Induced by Arginine-rich Peptides Leads to Their Direct Penetration into Cells.
Mol. Ther, 20(5), 984-993.
Yamagata K, Iwamoto D, Terashita Y, Li C, Wakayama S, Hayashi-Takanaka Y, Kimura H, Saeki K, and *Wakayama T. (2012)
Fluorescence Cell Imaging and Manipulation Using Conventional Halogen Lamp Microscopy.
PLoS ONE, 7, e31638.
Bergmann JH, Jakubsche JN, Martins NM, Kagansky A, Nakano M, Kimura H, Kelly DA, Turner BM, Masumoto H, Larionov V, and *Earnshaw WC. (2012)
Epigenetic Engineering: Histone H3K9 acetylation is compatible with kinetochore structure and function.
J Cell Sci, 125, 411-421.
Brookes E, de Santiago I, Hebenstreit D, Morris KJ, Carroll T, Xie SQ, Stock JK, Heidemann M, Eick D, Nozaki N, Kimura H, Ragoussis J, Teichmann SA, and *Pombo A. (2012)
Polycomb Associates Genome-wide with a Specific RNA Polymerase II Variant, and Regulates Metabolic Genes in ESCs.
Cell Stem Cell, 10, 157-170.
Iimori M, Ozaki K, Chikashige Y, Habu T, Hiraoka Y, Maki T, Hayashi I, Obuse C, Matsumoto T. (2012)
A mutation of the fission yeast EB1 overcomes negative regulation by phosphorylation and stabilizes microtubules.
Exp Cell Res, 2012 Feb 1; 318(3): 262-275.
2011
Asakawa H, Hiraoka Y, Haraguchi T. (2011)
Physical breakdown of the nuclear envelope is not necessary for breaking its barrier function.
Nucleus, Dec.; 2(6): 523-526.
Tsuchiya M, Ogawa H, Suzuki T, Sugiyama N, Haraguchi T Hiraoka Y. (2011)
Exportin 4 interacts with Sox9 through the HMG box and inhibits the DNA binding of Sox9.
PLoS ONE, 6(10):e25694
Hagiwara A, Tanaka Y, Hikawa R, Morone N, Kusumi A, Kimura H, and *Kinoshita M. (2011)
Submembranous septins as relatively stable components of actin-based membrane skeleton.
Cytoskeleton, 68, 512-525.
Tachiwana H, Kagawa W, Shiga T, Osakabe A, Miya Y, Saito K, Hayashi-Takanaka Y, Oda T, Sato M, Park SY, Kimura H, and *Kurumizaka H. (2011)
Crystal structure of the human centromeric nucleosome containing CENP-A.
Nature, 476: 232-235.
Hiraoka Y, Maekawa H, Asakawa H, Chikashige Y, Kojidani T, Osakada H, Matsuda A, Haraguchi T. (2011)
Inner nuclear membrane protein Ima1 is dispensable for intranuclear positioning of centromeres.
Genes Cells, Oct.; 16(10):1000-1011. Sep 1. [Epub ahead of print]
Sheltzer JM, Blank HM, Pfau SJ, Tange Y, George BM, Humpton TJ, BritoIL, Hiraoka Y, Niwa O, Amon A. (2011)
Aneuploidy drives genomic instability in yeast.
Science, Aug 19; 333(6045):1026-30.
Asakawa H, Hiraoka Y, Haraguchi T. (2011)
Nuclear translocation of RanGAP1 coincides with virtual nuclear envelope breakdown in fission yeast meiosis.
Commun. Integr. Biol, 4(3):312-314.
Hayashi-Takanaka Y, Yamagata K, Wakayama T, Stasevich TJ, Kainuma T, Tsurimoto T, Tachibana M, Shinkai Y, Kurumizaka H, Nozaki N, and *Kimura H. (2011)
Tracking epigenetic histone modifications in single cells using Fab-based live endogenous modification labeling.
Nucleic Acids Res, 3: 6475-6488.
Selected as "Featured Article（top 5%)"
Selected as "news" by BioTechnique.com
http://www.biotechniques.com/news/In-the-Loop/biotechniques-320697.html
Tachiwana H, Osakabe A, Shiga T, Miya Y, Kimura H, Kagawa W, and *Kurumizaka H. (2011)
Crystal structures of human nucleosomes containing major histone H3 variants.
Acta Crystallographica section D Biol Crystallogr, 67: 578-583.
To TK, Kim JM, Matsui A, Kurihara Y, Morosawa T, Ishida J, Tanaka M, Endo T, Kakutani T, Toyoda T, Kimura H, Yokoyama S, Shinozaki K, *Seki M. (2011)
Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1.
PLoS Genet, 7, e1002055.
Yamazaki, Y, Tokumasu, R, Kimura, H, and Tsukita, S. (2011)
Role of claudin-species specific dynamics in reconstitution and remodeling of the zonula occludens.
Mol. Biol. Cell, 22: 1495-1504.
Kondo T, Hamao K, Kamijo K, Kimura H, Morita M, Hosoya H. (2011)
Enhancement of myosin II / actin turnover at the contractile ring induces slower furrowing in dividing HeLa cells.
Biochem J, 435: 569-76.
Liu T, Rechtsteiner A, Egelhofer TA, Vielle A, Latorre I, Cheung MS, Ercan S, Ikegami K, Jensen M, Kolasinska-Zwierz P, Rosenbaum H, Shin H, Taing S, Takasaki T, Iniguez AL, Desai A, Dernburg AF, Kimura H, Lieb JD, Ahringer J, Strome S, Liu XS. (2011)
Broad chromosomal domains of histone modification patterns in C. elegans.
Genome Res, 21: 227-36.
Bergmann JH, Rodríguez MG, Martins NM, Kimura H, Kelly DA, Masumoto H, Larionov V, Jansen LE, Earnshaw WC. (2011)
Epigenetic engineering shows H3K4me2 is required for HJURP targeting and CENP-A assembly on a synthetic human kinetochore.
EMBO J, 30: 328-340.
Osborne EA, Hiraoka Y, Rine J.(2011)
Symmetry, asymmetry, and kinetics of silencing establishment in Saccharomyces cerevisiae revealed by single-cell optical assays.
Proc Natl Acad Sci U S A, 25;108(4): 1209-16.
Chen Y, Rai R, Zhou ZR, Kanoh J, Ribeyre C, Yang Y, Zheng H, Damay P, Wang F, Tsujii H, Hiraoka Y, Shore D, Hu HY, Chang S, Lei M. (2011)
A conserved motif within RAP1 has diversified roles in telomere protection and regulation in different organisms.
Nat. Struct. Mol. Biol, 18: 213-21.
Masuda H, Fong CS, Ohtsuki C, Haraguchi H, Hiraoka Y. (2011)
Spatio-temporal regulations of Wee1 at the G2-M transition.
Mol. Biol. Cell, 22: 555-569.
Selected as "Journal Cover"
Selected as "A Highlights from MBoC Selection"
2010
Tamura K, Fukao Y, Iwamoto M, Haraguchi T, Hara-Nishimura I. (2010)
Comprehensive Identification of Nuclear Pore Complex Components in Arabidopsis thaliana.
Plant Cell, E-publication ahead
Introduced in“In Brief”, the Plant Cell
Selected by a member of "the Faculty of 1000"
Asakawa H., Kojidani T,. Mori, C., Osakada H., Sato M., Ding D.-Q. Hiraoka Y., Haraguchi, T (2010)
Virtual breakdown of the nuclear envelope in fission yeast meiosis.
Curr. Biol, 20: 1919-1925.
Selected as“Featured Article” and Introduced in “Dispatch”, Curr. Biol., 20: pR923.
Chikashige Y, Haraguchi T, Hiraoka Y. (2010)
Nuclear envelope attachment is not necessary for telomere function in fission yeast.
Nucleus, 1: 481-486.
Ito, S., Tan L.-J., Andoh, D., Narita, T., Seki, M. Hirano, Y., Narita, K., Kuraoka, I., Hiraoka, Y. and Tanaka, K. (2010)
MMXD, a TFIIH-independent XPD-MMS19 protein complex involved in chromosome segregation.
Mol. Cell, 39: 632-640.
Kawai-Noma S, Pack C-G, Kojidani T, Asakawa H, Hiraoka Y, Kinjo M, Haraguchi T, Taguchi H, Hirata A. (2010)
In vivo evidence for the fibrillar structures of Sup35 prions in yeast cells.
J. Cell Biol, 190: 223-231.
Capanni C, Cenni V, Haraguchi T, Squarzoni S, Ogris E, Novelli G, Maraldi NM, Lattanzi G. (2010)
Lamin A precursor induces barrier-to-autointegration factor nuclear localization.
Cell Cycle, 9: 2600-2610.
Iwamoto M, Asakawa H, Hiraoka Y and Haraguchi T. (2010)
Nucleoporin Nup98: a gatekeeper in the eukaryotic kingdoms.
Genes Cells, 15: 661-669.
Nakano T, Shuai J, Koujin T, Suda T, Hiraoka Y, Haraguchi T. (2010)
Biological Excitable Media Based on Non-excitable Cells and Calcium Signaling.
Nano Communication Networks, 1: 43-49.
Iwamatsu T., Haraguchi T, Nagano H. (2010)
Cytoplasmic localization of DNA polymerase in oocytes of the teleost fish, Oryzias latipes.
Bulletin of Aichi University of Education, 59: 43-50.
Kelly AE, Ghenoiu C, Xue JZ, Zierhut C, Kimura H, and Funabiki H (2010)
Survivin reads phosphorylated histone H3 threonine 3 to activate the mitotic kinase Aurora B.
Science 330, 235-239.
Inagaki S, Miura-Kamio A, Nakamura Y, Lu F, Cui X, *Cao X, Kimura H, Saze H, and Kakutani T (2010)
Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome.
EMBO J, 29, 3496-506.
Rechtsteiner A, Ercan S, Takasaki T, Phippen TM, Egelhofer T, Wang W, Kimura, H, Lieb JD, and Strome S (2010)
Epigenetic role of a histone H3K36 methyltransferase in propagating the memory of germline gene expression.
PLoS Genet, 6, e1001091.
Reynoird N, Schwartz BE, Delvecchio M, Sadoul K, Meyers D, Mukherjee C, Caron C, Kimura H, Rousseaux S, Cole PA, Panne D, French CA, and *Khochbin S (2010)
Oncogenesis by sequestration of CBP/p300 in transcriptionally inactive hyperacetylated chromatin domains.
EMBO J, 29, 2943-2952.
Furuhashi H, Takasaki T, Rechtsteiner A, Li T, Kimura H, Strome S, Checchi PM, and Kelly WG (2010)
Trans-generational epigenetic regulation of C. elegans primordial germ cells.
Epigenetics Chromatin, 3, 15.
Nozawa R-S, Nagao K, Masuda H-T, Iwasaki O, Hirota T, Nozaki N, Kimura H, and *Obuse C (2010)
Human POGZ modulates HP1 dissociation from mitotic chromosome arms through Aurora B activation.
Nature Cell Biol, 12, 719-727.
Tachiwana H, Kagawa W, Osakabe A, Kawaguchi K., Shiga T, Hayashi-Takanaka Y, Kimura H, and *Kurumizaka H (2010)
Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T.
Proc Natl Acad Sci USA, 107, 10454-10459.
Matsui T., Leung D., Miyashita H., Maksakova I.A., Miyachi H., Kimura H., Tachibana M., Lorincz M.C., and Shinkai, Y. (2010)
Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET.
Nature, 464, 927-931
Kimura H., Hayashi-Takanaka Y., and Yamagata K.(2010)
Visualization of DNA methylation and histone modifications in living cells.
Curr. Opin. Cell Biol, 22(3), 412-418
Hashimoto H., Takami Y., Sonoda E., Iwasaki T., Iwano H., Tachibana M., Takeda S., Nakayama T., Kimura H., and Shinkai Y. (2010)
Histone H1 null vertebrate cells exhibit altered nucleosome architecture.
Nucleic Acids Res, 38, 3533-3545
Ding DQ, Haraguchi T, Hiraoka Y. (2010)
From meiosis to postmeiotic events: alignment and recognition of homologous chromosomes in meiosis.
The FEBS J, 277(3),565-70
Kobayashi S., Kojidani T., Osakada H., Yamamoto A., Yoshimori T., Hiraoka Y., and Haraguchi T. (2010)
Artificial induction of autophagy around polystyrene beads in nonphagocytic cells.
Autophagy, 6(1),36-45
2009
Chikashige Y, Yamane M, Okamasa K, Tsutsumi C, Kojidani T, Sato M, Haraguchi T, Hiraoka Y. (2009)
Membrane proteins Bqt3 and Bqt4 anchor telomeres to the nuclear envelope to ensure chromosomal bouquet formation.
J. Cell Biol, 187:413-427
Hiraoka Y, Dernburg AF. (2009).
The SUN rises on meiotic chromosome dynamics.
Dev. Cell, 17(5),598-605
Nakano T, Koujin T, Suda T, Hiraoka Y, Haraguchi T. (2009).
A locally-induced increase in intracellular Ca2+ propagates cell-to-cell in the presence of plasma membrane Ca2+ ATPase inhibitors in non-excitable cells.
FEBS Lett, 583(22),3593-3599
Murai T, Nakase Y, Fukuda K, Chikashige Y, Tsutsumi C, Hiraoka Y, Matsumoto T. (2009)
Distinctive Responses to Nitrogen Starvation in the Dominant Active Mutants of the Fission Yeast Rheb GTPase.
Genetics, 183: 517-527.
Ogawa H, Komatsu K, Hiraoka Y, and Morohashi K. (2009).
Transcriptional Suppression by Transient Recruitment of ARIP4 to Sumoylated Nuclear Receptor Ad4BP/SF-1.
Mol. Biol. Cell, 20: 4235-4245.
Hayashi-Takanaka, Y., Yamagata, K., Nozaki, N. and Kimura, H. (2009)
Visualizing histone modifications in living cells: spatiotemporal dynamics of H3 phosphorylation during interphase.
J. Cell Biol, 187: 781-790
Goto Y. and Kimura H. (2009)
Inactive X chromosome-specific histone H3 modifications and CpG hypomethylation flank a chromatin boundary between an X-inactivated and an escape gene.
Nucleic Acids Res, published online; doi:10.1093/nar/gkp860
Wada Y., Ohta Y., Xu M., Tsutsumi S., Minami T., Inoue K., Komura D., Kitakami J., Oshida N, Papantonis A., Izumi A., Kobayashi M., Meguro H, Kanki Y., Mimura I., Yamamoto K., Mataki C., Hamakubo T., Shirahige K., Aburatani H., Kimura H., Kodama T., Cook P.R., and Ihara S. (2009)
A wave of nascent transcription on activated human genes.
Proc. Natl Acad. Sci. USA, published online; doi:10.1073/pnas.0902573106
Cardinale S., Bergmann J.H., Kelly D., Nakano M., Valdivia M.M., Kimura H., Masumoto H., Larionov V. and Earnshaw W.C. (2009)
Hierarchical inactivation of a synthetic human kinetochore by a chromatin modifier.
Mol. Biol. Cell, 20, 4194-4204
Ishimura A., Terashima M., Kimura H., Akagi K., Suzuki Y., Sugano S., and Suzuki T. (2009)
Histone demethylase Jmjd2c increases the expression of Mdm2 oncogene.
Biochem. Biophys. Res. Commun, 389, 366-371.
Iwamoto M, Mori C, Kojidani T, Bunai F, Hori T, Fukagawa T, Hiraoka Y, and Haraguchi T (2009)
Two Distinct Repeat Sequences of Nup98 Nucleoporins Characterize Dual Nuclei in the Binucleated Ciliate Tetrahymena.
Current Biology, 19, 843-847
Asakawa H, Hiraoka Y. (2009)
Live-cell fluorescence imaging of meiotic chromosome dynamics in S. pombe.
Methods Mol. Biol, 558: 53-64.
Hiraoka Y, Kawamata K, Haraguchi T and Chikashige Y (2009)
Codon usage bias is correlated with gene expression levels in the fission yeast Schizosaccharomyces pombe
Genes Cells, 14, 499-509
Hayashi A, Ding, DQ, Tsutsumi C, Chikashige Y, Masuda H, Haraguchi T and Hiraoka Y (2009)
Localization of gene products using a chromosomally tagged GFP-fusion library in the fission yeast Schizosaccharomyces pombe
Genes Cells, 14, 217-225
2008
Tachibana M., Matsumura Y., Fukuda M., Kimura H. and Shinkai Y. (2008)
G9a/GLP complexes independently mediate H3K9 and DNA methylation to silence transcription.
EMBO J, 27, 2681-2690.
Kim J.-M., Kim To T., Ishida J., Morosawa T., Kawashima M., Matsui A., Toyoda T., Kimura H., Shinozaki K. and Seki M. (2008)
Alterations of lysine modifications on histone H3 N-tail under drought stress conditions in Arabidopsis thaliana.
Plant Cell Physiol, 49, 1580-1588
Kimura H, Hayashi-Takanaka Y, Goto Y, Takizawa N, Nozaki N. (2008)
The organization of histone H3 modifications as revealed by a panel of specific monoclonal antibodies.
Cell Struct Funct, 33(1):61-73.
Tachiwana H, Osakabe A, Kimura H, Kurumizaka H .(2008)
Nucleosome formation with the testis-specific histone H3 variant, H3t, by human nucleosome assembly proteins in vitro.
Nucleic Acids Res, 36(7):2208-18.
Nakamura T, Asakawa H, Nakase Y, Kashiwazaki J, Hiraoka Y, Shimoda C. (2008)
Live observation of forespore membrane formation in fission yeast.
Mol Biol Cell, 19(8):3544-53.
Ishii K, Ogiyama Y, Chikashige Y, Soejima S, Masuda F, Kakuma T, Hiraoka Y, Takahashi K.(2008)
Heterochromatin integrity affects chromosome reorganization after centromere dysfunction
Science, 321(5892):1088-91
Yamamoto A, Kitamura K, Hihara D, Hirose Y, Katsuyama S, Hiraoka Y.(2008)
Spindle checkpoint activation at meiosis I advances anaphase II onset via meiosis-specific APC/C regulation
J Cell Biol, 182(2):277-88
Hirayama S., Yamazaki Y., Kitamura A., Oda Y., Morito D., Okawa K., Kimura H., Cyr D.M., *Kubota H. and Nagata K. (2008)
MKKS is a centrosome-shuttling protein degraded by disease-causing mutations via CHIP-mediated ubiquitination.
Mol. Biol. Cell, 19, 899-911.
Haraguchi T., Kojidani T., Koujin T., Shimi T., Osakada H., Mori C., Yamamoto A., and Hiraoka Y..(2008)
Live cell imaging and electron microscopy reveal dynamic processesof BAF-directed nuclear envelope assembly
J Cell Sci, 121: 2540-2554
Yomoda J, Muraki M, Kataoka N, Hosoya T, Suzuki M, Hagiwara M, Kimura H.(2008)
Combination of Clk family kinase and SRp75 modulates alternative splicing of Adenovirus E1A.
Genes Cells, 13, 233-244
T. Nakano, Y. H. Hsu, W. C. Tang, T. Suda, D. Lin, T. Koujin, T. Haraguchi, and Y. Hiraoka.(2008).
Microplatform for Intercellular Communication.
Proc. Third Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems, Jan.
Nakano T, Suda T, Koujin T, Haraguchi T, Hiraoka Y. (2008)
Molecular communication through gap junction channels.
Springer Transactions on Computational Systems Biology X, vol. 5410, pp. 81–99.
2007
*Ikura T., Tashiro S., Kakino A., Shima H., Jacob N., Amunugama R., Yoder K., Izumi S., Kuraoka I., Tanaka, K., Kimura H., Ikura M., Nishikubo S., Ito T., Muto A., Miyagawa K., Takeda S., Fishel R., Igarashi K. and *Kamiya K. (2007)
DNA damage-dependent acetylation and ubiquitination of H2AX enhances chromatin dynamics.
Mol. Cell. Biol, 27, 7028-7040.
Murakawa Y., Sonoda E., Barber L.J., Zeng W., Yokomori K., Kimura H., Niimi A., Lehmann A., Zhao G.U., Hochegger H., Boulton S.J. and *Takeda S. (2007)
Inhibitors of the proteasome suppress homologous DNA recombination in mammalian cells.
Cancer Res, 67, 8536-8543.
Hashimoto H., Sonoda E., Takami Y., Kimura H., Nakayama T., Tachibana M., Takeda S. and *Shinkai Y. (2007)
Histone H1 variant, H1R is involved in DNA damage response.
DNA Repair, 6, 1584-1595.
Shiomi Y., Masutani C., Hanaoka F., Kimura H. and *Tsurimoto T. (2007)
A second proliferating cell nuclear antigen loader complex, Ctf18-replication factor C, stimulates DNA polymerae η activity.
J. Biol. Chem, 282, 20906-20914.
Nojima T., Hirose T., Kimura H. and *Hagiwara M. (2007)
The interaction between cap-binding complex and RNA export factor is required for intronless mRNA export.
J. Biol. Chem, 282, 15645-15651.
Chikashige Y, Tsutsumi C, Okamasa K, Yamane M, Nakayama J, Niwa O, Haraguchi T, Hiraoka Y.(2007).
Gene Expression and Distribution of Swi6 in Partial Aneuploids of the Fission Yeast Schizosaccharomyces pombe
Cell Struct. Funct, 32(2):149-61
Ding, D.-Q. and Hiraoka, Y. (2007).
Nuclear Movement Enforcing Chromosome Alignment in Fission Yeast―Meiosis Without Homolog Synapsis
In Genome Dynamics & Stability (3) Recombination and Meiosis (Richard Egel, Dirk-Henner Lankenau, ed). Springer, pp231~247
Chikashige, Y., Haraguchi, T., and Hiraoka, Y. (2007).
Another way to move chromosomes.
Chromosoma, 116(6):497-505.
Kato, M., Kato, Y., Nishida, M., Hayakawa, T., Haraguchi, T., Hiraoka, Y., H. Inoue, Y., and Yamaguchi, M. (2007).
Functional Domain Analysis of Human HP1 Isoforms in Drosophila.
Cell Struct. Funct, 32, 57-67.
Asakawa, H., Haraguchi, T. and Hiraoka, Y. (2007)
Reconstruction of the kinetochore: a prelude to meiosis.
Cell Division, 2:17.
Shimanuki, M., Chung, S.Y., Chikashige, Y., Kawasaki, Y., Uehara, L., Tsutsumi, C., Hatanaka, M., Hiraoka, Y., Nagao, K., and Yanagida, M. (2007).
Two-step, extensive alterations in the transcriptome from G0 arrest to cell division in Schizosaccharomyces pombe.
Genes Cells, 12, 677-692.
Haraguchi, T, Koujin, T., Osakada, H., Kojidani, T., Mori, C., Masuda, H., and Hiraoka, Y. (2007).
Nuclear localization of barrier-to-autointegration factor is correlated with progression of S-phase in human cells.
J. Cell Sci, 120, 1967-1977.
Haraguchi, T., and Hiraoka, Y. (2007).
Breakdown and reformation of the nuclear envelope.
In Nuclear Dynamics: Molecular Biology and Visualization of the Nucleus (K. Nagata, K. Takeyasu, eds). Springer, pp89-106.
2006
Hayashi, A., Asakawa, H., Haraguchi, T., and Hiraoka, Y. (2006).
Reconstruction of the kinetochore during meiosis in fission yeast Schizosaccharomyces pombe.
Mol. Biol. Cell 17, 5173-5184.
Ding, D.-Q., Sakurai, N., Katou, Y., Itoh, T., Shirahige, K., Haraguchi, T., and Hiraoka, Y. (2006).
Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeast.
J. Cell Biol, 174, 499-508.
Harigaya, Y., Tanaka, H., Yamanaka, S., Tanaka, K., Watanabe, Y., Tsutsumi, C., Chikashige, Y., Hiraoka, Y., Yamashita, A., and Yamamoto, M. (2006).
Selective elimination of mRNA prevents an incidence of untimely meiosis.
Nature, 442, 45-50.
Matsuyama, A., Arai, R., Yashiroda, Y., Shirai,A., Kamata, A., Sekido, S., Kobayashi,Y., Hashimoto, A., Hamamoto, M.,Hiraoka, Y., Horinouchi, S., and Yoshida, M. (2006).
ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Nature Biotechnology, 24, 841-847.
Wang, F., Koyama, N., Nishida, H., Haraguchi, T., Reith, W., and Tsukamoto, T. (2006).
The Assembly and maintenance of heterochromatin Initiated by transgene repeats are independent of the RNA interference pathway in mammalian cells.
Mol. Cell. Biol, 26, 4028-4040.
Nakase, Y., Fukuda, K., Chikashige, Y., Tsutsumi, C., Morita, D., Kawamoto, S., Ohnuki, M., Hiraoka, Y., and Matsumoto, T. (2006).
A defect in protein farnesylation suppresses a loss of Schizosaccharomyces pombe tsc2+, a homolog of the human gene predisposing tuberous sclerosis complex.
Genetics, 173, 569-578.
Chikashige, Y., Tsutsumi, C., Yamane, M., Okamasa, K., Haraguchi, T., and Hiraoka, Y. (2006).
Meiotic proteins Bqt1 and Bqt2 tether telomeres to form the bouquet arrangement of chromosomes.
Cell, 125, 59-69.
Masuda, H., Toda, T., Miyamoto, R., Haraguchi, T., and Hiraoka, Y. (2006).
Modulation of Alp4 function in Schizosaccharomyces pombe induces novel phenotypes that imply distinct functions for nuclear and cytoplasmic γ-tubulin complexes.
Genes Cells, 11, 319-336.
Masuda, H., Miyamoto, R., Haraguchi, T., and Hiraoka, Y. (2006).
The carboxy-terminus of Alp4 alters microtubule dynamics to induce oscillatory nuclear movement led by the spindle pole body in Schizosaccharomyces pombe.
Genes Cells, 11, 337-352.
Cooper, J. P. and Hiraoka, Y. (2006).
Fission yeast telomeres.
In Telomeres, Second edition (Titia de Lange, Vicki Lundblad, Elizabeth Blackburn, eds).
Cold Spring Harbor Laboratory Press, pp. 495-523.
Ding, D.-Q. and Hiraoka, Y. (2006).
Genome-wide screening of intracellular protein localization in fission yeast. In Cell Biology: A Laboratory Handbook, Third edition (Julio Celis, ed).
Elsevier Science, pp.171-177.
日本語の総説／著書
2021平岡泰（2021）
減数分裂の相同染色体対合
実験医学増刊号「相分離 メカニズムと疾患」 vol. 39. No. 10，pp1605-1612、羊土社
2020
山縣一夫、福田龍人、赤井絹香、原口徳子(2020)
受精卵における人工細胞核構築
月刊「細胞」vol. 52 (6), pp8-11(pp236-239), 特集号「遺伝子制御の基盤となる細胞核・クロマチン構造」ニューサイエンス社
2019
原口徳子、山縣一夫、鈴木由華 (2019)
受精卵にDNAを入れると「人工細胞核」ができた！
Academist journal, 2019.9.2
Journal Page
2018
平岡泰 (2018)
構造化照明顕微鏡（SIM）
実験医学増刊 Vol 36, No. 2「生きてるものは全部観る！ イメージングの選び方・使い方100＋」（原田慶恵，永井健治編集）pp95-96、羊土社
平岡泰 (2018)
デコンボルーション
実験医学増刊 Vol 36, No. 2「生きてるものは全部観る！ イメージングの選び方・使い方100＋」（原田慶恵，永井健治編集）pp206-207、羊土社
2017
原口徳子、平岡泰 (2017)
ライブクレム顕微鏡法
「生産と技術」 Vol 69, No. 2, pp59-64. 生産技術振興協会
2016
平野泰弘、松田厚志、平岡泰（2016）
実践編3 3D-SIM による細胞内構造の超解像イメージング
「初めてでもできる！超解像イメージング 」（岡田康志 編集）pp146-155、羊土社
松田厚志、平野泰弘、平岡泰（2016）
原理・応用編3 構造化照明顕微鏡法SIM―縞照明のつくるモアレが可能にする超解像観察
「初めてでもできる！超解像イメージング 」（岡田康志 編集）pp219-226、羊土社
2015
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原口徳子・木村宏・平岡泰編 （2015） 「新・生細胞蛍光イメージング」 共立出版 全352ページ |
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平岡泰 第1章 蛍光顕微鏡の基礎 PP1-8 第4章 3次元イメージング PP27-33 実習1 蛍光顕微鏡の調整・基本操作 PP246-251 実習3 3次元マルチカラー（全視野顕微鏡） PP269-272 実習4 3次元マルチカラー（共焦点顕微鏡） PP273-276 |
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平岡泰、原口徳子 第5章 マルチカラータイムラプス蛍光顕微鏡 PP34-42 第6章 スペクトルイメージ PP43-48 |
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平野泰弘、松田厚志 第7章 超分解能蛍光顕微鏡法 PP49-58 |
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松田厚志 第10章 ノイズ除去法 PP85-95 |
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原口徳子 第11章 生細胞試料の準備 PP96-100 実習5 生細胞タイムラプス PP277-285 |
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木村宏、金城政孝、原口徳子、平岡泰 第12章 蛍光色素・蛍光タンパク質 PP101-113 |
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原口徳子、永井健治、松田知己 実習7 FRET PP299-302 |
蛍光イメージング、蛍光顕微鏡概説
「発光の事典」（木下修一 他 編集）PP525-530、朝倉書店
平岡泰（2015）
蛍光イメージング、イメージングの対象
「発光の事典」（木下修一 他 編集）pp606-611、朝倉書店
2014
松田厚志、平野泰弘、原口徳子（2014)
超高分解蛍光顕微鏡法 「光アライアンス」, 3月号, pp31-35, 日本工業出版
2013
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平岡泰、原口徳子 (2013) 細胞核の基本構造 「染色体と細胞核のダイナミクス」（平岡泰、原口徳子 編）pp1-7, 化学同人 |
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平岡泰 (2013) 染色体の核内配置 「染色体と細 胞核のダイナミクス」（平岡泰、原口徳子 編）pp115-127, 化学同人 |
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原口徳子、岩本政明 (2013) 核膜の機能・構造・ダイナミクス 「染色体と細胞核のダイナミクス」（平岡泰、原口徳子 編）pp129-145, 化学同人 |
2012
丁大橋、平岡泰 (2012)
非コードRNAが相同染色体の相互認識を担う
「実験医学」、羊土社、Vol. 30 (16): 2617-2619.
木村 宏, 佐藤優子, 林 陽子. (2012)
内在性蛋白質翻訳後修飾の生細胞計測
生物物理 52, 234-235.
松田厚志、平野泰弘、平岡泰（2012）
核内構造観察のための超分解能蛍光イメージング技術
「細胞工学」、Vol. 31 (8): 863-869.
2011
原口徳子、小林昇平(2011)
核膜タンパク質
生体の科学「細胞核―構造と機能」, Vol. 62, No.5, pp366-369
原口徳子、岩本政明(2011)
核膜タンパク質エメリン
生体の科学「細胞核―構造と機能」, Vol. 62, No.5, pp370-371
平岡泰(2011)
分裂酵母核膜タンパク質
生体の科学「細胞核―構造と機能」, Vol. 62, No.5, pp372-373
平野泰弘、平岡泰(2011)
ヒストンH1
生体の科学「細胞核―構造と機能」, Vol. 62, No.5, pp438-439
2010
近重裕次、平岡泰 (2010)
日向に咲くブーケ：SUNタンパク質と減数分裂期 染色体のダイナミクス
「細胞工学」、秀潤社、29(9):890-894.
小林昇平、原口徳子 (2010)
人工ビーズを用いてオートファジーを視る
「顕微鏡」、日本顕微鏡学会、45(2): 78-82.
平岡泰、原口徳子 (2010)
テロメアとテロメア合成酵素によって染色体が保護され る仕組みの発見
「蛋白質・核酸・酵素」、共立出版、55(1): 104-107.
木村 宏、林 陽子（2010）
エピゲノム制御にかかわるヒストン修飾のイメージング
医学のあゆみ 235(10),995-1000
木村 宏、林 陽子（2010）
特異的モノクローナル抗体を用いたメチル化ヒストンダイナミクスの可視化
「エピジェネティクスと疾患（牛島俊和、塩田邦郎、田嶋正二、吉田 稔／編・実験医学増刊）」羊土社 p115-121
日経産業新聞 2010年8月16日 ７面
「細胞分裂時の染色体分配：酵素の働く流れ解明、米大と阪大、抗がん剤候補に」
産学連携推進マガジン Bio Garage 6 (2010. 9) p16-17
「工夫で迫るタンパク質動態解析」
2009
平岡泰 (2009)
思い出の論文 霧のサンフランシスコ
細胞工学、秀潤社、28 (12):1284-1285
平岡 泰、原口 徳子 (2009)
テロメアとテロメア合成酵素によって染色体が保護されるしくみの発見
蛋白質・核酸・酵素 55(1),104-107
平岡 泰 (2009)
遺伝情報の時空間場の理解に向けて
実験医学 増刊 細胞核－遺伝情報制御と疾患 27(17),2708-2714
平岡 泰 (2009)
ノーベル医学生理学賞：染色体の末端を護るしくみ
実験医学 27(19),3110-3112
木村 宏、林 陽子 (2009)
ヒストンダイナミクスの可視化と膜透過化細胞による再構成
実験医学（増刊号）、27: 2833-2838
小林昇平、原口徳子 (2009)
自己組織体としての細胞核
「自己組織化」ハン ドブック（監修：国武豊喜、編集幹事：下村政嗣、山口智彦）、エヌ・ティー・ エス社、 pp306-312
原口徳子（2009)
ライブからライブクレムへ ―蛍光顕微鏡法と電子顕微鏡 法との融合―
シリーズ『サロンド・バイオ・イメージング』、「蛋白質・核 酸・酵素」、共立出版、 54(13): 1784-1791.
岩本政明、原口徳子（2009）
核膜バリアの意味：その破綻によって見えてき た核膜孔複合体の機能
「実験医学」、羊土社、27(17): 2759-2766.
原口徳子，荒神尚子，糀谷知子，小坂田裕子（2009）
Live CLEM 法
「組織 細胞化学2009」（日本組織細胞化学会編）、pp. 149-157
2008
平岡泰（2008）
生細胞蛍光イメージング：生きたまま、より速く、より高 く、より美しく、 シリーズ『サロンド・バイオ・イメージング』
「蛋白質・核酸・酵素」共立出版
原口 徳子、平岡 泰 (2008)
電子顕微鏡に期待すること：電子顕微鏡に動きを与えるイメージング法
細胞工学別冊「電子顕微鏡：ナノワールドを読み解くパワフル技術 」（藤本豊士、山本章嗣 編） 秀潤社
木村 宏．（2008）
ビフォー＆アフター フォトブリーチ
蛋白質核酸酵素 53, 1992-1999.
林（高中）陽子、後藤 友二、木村 宏 (2008)
クロマチン免疫沈降(ChIP)法．
「エピジェネティクス実験プロトコール（牛島俊和・眞貝洋一／編）」（羊土社）p143-166.
小林昇平、原口徳子 (2008)
光顕と電顕で同時に見る
細胞工学別冊「電子顕微鏡：ナノワールドを読み解くパワフル技術 」（藤本豊士、山本章嗣 編）秀潤社
原口徳子 (2008)
蛍光顕微鏡を用いたナノイメージング
「ナノイメージング」 ブッカーズ pp3-9
原口徳子 (2008)
生細胞イメージング 新手法開発と人工細胞核の創製に挑む
「化学」 vol61, no1, pp30-31
2007
原口 徳子・木村 宏・平岡 泰 編 （2007）
生細胞蛍光イメージング -講義と実習- 阪大・北大 顕微鏡コースブック
共立出版
木村 宏 (2007)
光退色と光刺激による細胞内分子動態の解析．
化学と生物45, 798-804.
林 亜紀、平岡 泰 (2007)
酵母のin vivoイメージングプローブ 「蛍光・発光試薬の選び方と使い方」
pp109-113
平岡 泰、淺川 東彦、林 亜紀 （2007)
染色体ダイナミクス．「酵母のすべて」
（大隅良典、下田親 編）シュプリンガー・フェアラーク東京 55-60.
原口徳子（2007）
蛍光顕微鏡を使いこなす
「蛍光・発光試薬の選び方と使い方」 p76
岩本政明、原口徳子（2007
細胞核構造を染め分ける蛍光プローブ
「蛍光・発光試薬の選び方と使い方」 pp71-76
小林昇平、原口徳子（2007）
蛍光分子イメージングと電子顕微鏡観察との融合
「化学と生物」 45(7): 482-487.
原口徳子（2007)
国際シンポジウム「Functional Organization of the Nucleus」
淡路夢舞台国際会議場 広報季刊誌「アジェンダ」 Vol. 28
2006
原口 徳子、平岡 泰（2006)
分子動態解析のための蛍光イメージング.
蛋白質核酸酵素 vol. 51, No. 14, 1972-1977
淺川 東彦、平岡 泰 (2006)
減数分裂と染色体動態.
蛋白質核酸酵素 vol. 51, No. 14, 2159--2164
小林昇平、原口徳子 (2006)
細胞周期における核膜のダイナミクス.
蛋白質核酸酵素 vol. 51, No. 14, 2165-2171
原口 徳子、平岡 泰（2006)
電子顕微鏡画像に動きを与えるイメージング法.
細胞工学vol. 25, No. 10, 1188-1189
原口 徳子、平岡 泰 共著（2006)
「ビジュアルバイオロジー：細胞の蛍光イメージング」
サイエンス社.