Shibata, T., Nishikawa, M., Matsuoka, S. and Ueda, M. (2012).
  Modeling the self-organized phosphatidylinositol lipids signaling system in chemotactic cells based on quantitative image analysis.
  Journal of Cell Science, in press.

Tsujioka, M., Yumura, S., Inouye, K., Patel, H., Ueda, M. and Yonemura, S. (2012).
  Talin couples the actomyosin cortex to the plasma membrane during rear retraction and cytokinesis.
  Proc. Natl. Acad. Sci. USA, 109(32): 12992-12997.

Nishimura, S. I., Ueda, M. and Sasai, M. (2012).
  Non-Brownian dynamics and strategy of amoeboid cell locomotion.
  Physical Review E. 85, 041909.

Matsuoka, S. (2011).
  Statistical Analysis of Lateral Diffusion and Reaction Kinetics of Single Molecules on Membranes of Living Cells.
  In Cell Signaling Reactions: Single-Molecule Kinetic Analysis. (Sako, Y. and Ueda, M. eds). Springer-Verlag. in press.

Miyanaga, Y. and Ueda, M. (2011).
  Single-Molecule Kinetic Analysis of Stochastic Signal Transduction Mediated by G-protein Coupled Chemoattractant Receptors.
  In Cell Signaling Reactions: Single-Molecule Kinetic Analysis. (Sako, Y. and Ueda, M. eds). Springer-Verlag. pp33-57.

Tsujioka, M. (2011).
  Cell migration in multicellular environments, Develop. Growth Differ., 53, 528-537.

柴田達夫，上田昌宏
  「細胞における情報処理の確率性と自発的対称性の破れ」(2011)
  「生命科学の新しい潮流 理論生物学」 共立出版 編集 望月敦史、p.97-115．

松岡里実，上田昌宏
  “確率的な細胞内シグナル処理の1分子イメージング解析”, 最新医学　第66巻，第10号，pp.100-106 （2011）.

Arai, Y., Shibata, T., Matsuoka, S., Sato, M. J., Yanagida, T. and Ueda, M. (2010).
  Self-organization of the phosphatidylinositol lipids signaling system for random cell migration.
  Proc. Natl. Acad. Sci. USA, 107(27): 12399-12404.　
（Science Signaling, EDITORS' CHOICE　に紹介された．；"Organized Randomness", Vol. 3, Issue 130, p. ec210(13 July, 2010)．
Nature Chemical Biology, Research Highlightsに紹介された．；"Migration in cue-less cells", Vol. 6, p564(Augudt, 2010)．
Faculty of 1000 Biologyに選出された．
物理系研究者に生物関連論文を紹介する Virtual Journal of Biological Physics Research に選ばれた．）

松岡里実、佐藤雅之、上田昌宏　(2010).
  細胞の自発運動におけるPI(3,4,5)P₃代謝系の自己組織化,
 『脂質生物学 - 脂質による生体調節の機構 - 』, 実験医学，28, 3266-3274．

Miyanaga, Y., Matsuoka, S. and Ueda, M. (2009).
  Single-molecule imaging techniques to visualize chemotactic signaling events on the membrane of living Dictyostelium cells.
  Chemotaxis. (eds. D. Hereld and T. Jin) Methods in Molecular Biology, 571: 417-435.

Matsuoka, S., Shibata, T. and Ueda, M. (2009).
  Statistical analysis of lateral diffusion and multi-state kinetics in single-molecule imaging.
  Biophys. J., 97: 1115-1124.

Sato, M. J., Kuwayama, H., van Egmond, W. N., Takayama, A. L. K., Takagi, H., van Haastert, P. J. M., Yanagida, T. and Ueda, M. (2009).
  Switching direction in electric-signal-induced cell migration by cyclic guanosine monophosphate and phosphatidylinositol signaling.
  Proc. Natl. Acad. Sci. USA, 106(16): 6667-6672.　
（Faculty of 1000 Biologyに選出された．
物理系研究者に生物関連論文を紹介する Virtual Journal of Biological Physics Research に選ばれた．）

Nishimura, S. I., Ueda, M. and Sasai, M. (2009).
  Cortical factor feedback model for cellular locomotion and cytofission.
  PLoS Computational Biology, 5(3): e1000310.

上田昌宏 (2009).
  粘菌の走化性情報処理の仕組みを１分子計測で探る,
  『研究をささえるモデル生物　—実験室いきものガイド—』　（株式会社　化学同人）, 193-194.

上田昌宏 (2009).
  確率的シグナル伝達反応の細胞内１分子蛍光イメージング解析,
  バイオインダストリー,（（株）シーエムシー出版）, Vol 26, No2, 39-46.

新井由之, 松岡里実, 上田昌宏 (2009).
  走化性情報処理反応の細胞内自己組織化とゆらぎ,
 『自己組織化ハンドブック』 （（株）エヌ・ティー・エス）, 第1編基礎編，第１章パターン形成，３．生命系の数理 349-354.

Ueda, M., Shibata, T. and Sako, Y. (2008).
  Signal transduciton across the plasma membrane.  Single Molecule Dynamics in Life Science.
  (Yanagida, T. and Ishii, Y. eds.). WILEY-VCH Verelag GmbH & Co. KGaA, Weinheim, pp. 99-116.

Shibata, T. and Ueda, M. (2008).
  Noise generation, amplification and propagation in chemotactic signaling systems of living cells.
  BioSystems, 93: 126-132.

Matsuoka, S., Miyanaga, Y., Yanagida, T. and Ueda, M. (2008).
  Single molecule imaging of stochastic signaling events in living cells.
  Single Molecule Manual.
  (Selvin, P. R. and Ha, T. eds.) Cold Spring Harbor Laboratory Press. pp. 239-258.

Yumura, S., Ueda, M., Sako, Y., Kitanishi-Yumura, T. and Yanagida, T. (2008).
  Multiple mechanisms for accumulation of myosin II filaments at the equator during cytokinesis.
  Traffic, 9: 2089-2099.

Takagi, H., Sato, M. J., Yanagida, T. and Ueda, M. (2008).
  Functional analysis of spontaneous cell movement under different physiological conditions.
  PLoS ONE, 3(7): e2648.

Ueda, M., Ueda, M., Takagi, H., Sato, M. J., Yanagida, T., Yamashita, I. and Setsune, K. (2008).
  Biologically-inspired stochastic vector matching for noise-robust information processing.
  Physica A, 387: 4475-4481.

Kuwayama, H., Yanagida, T. and Ueda, M. (2008).
  DNA oligonucleotide-assisted genetic manipulation increases transformation and homologous recombination efficiencies: evidence from gene targeting of Dictyostelium discoideum.
  Journal of Biotechnology, 133: 418-423.

Yanagida, T., Ueda, M., Murata, T., Esaki, S. and Ishii, Y. (2007).
  Brownian motion, fluctuation and life.
  BioSystems, 88: 228-242.

Ueda, M. and Shibata, T. (2007).
  Stochastic signal processing and transduction in chemotactic response of eukaryotic cells.
  Biophys. J., 93: 11-20.

Sato, M. J., Ueda, M., Takagi, H., Watanabe, T. M., Yanagida, T. and Ueda, M. (2007).
  Input-output relationship in galvanotactic response of Dictyostelium cells.
  Biosystems, 88: 261-270.

Miyanaga, Y., Matsuoka, S., Yanagida, T. and Ueda, M. (2007).
  Stochastic signal inputs for chemotactic response in Dictyostelium cells revealed by single molecule imaging techniques.
  Biosystems, 88: 251-260.

Matsuoka, S., Iijima, M., Watanabe, T. M., Kuwayama, H. Yanagida, T., Devreotes, P. and Ueda M. (2006).
  Single molecule analysis of chemoattractant-stimulated membrane recruitment of a PH domain-containing protein.
  J. Cell Sci. 119: 1071-1079.  (Journal of Cell Science Prize, Best Paper Award 2006).

Vazquez, F., Matsuoka, S., Sellers, W. R., Yanagida, T., Ueda, M. and Devreotes, P. (2006).
  Tumor suppressor PTEN acts through dynamic interaction with the plasma membrane.
  Proc. Natl. Acad. Sci. USA 103: 3633-3638.

Ueda, M., Sako, Y., Tanaka, T., Devreotes, P. and Yanagida, T. (2001).
  Single molecule analysis of chemotactic signaling in Dictyostelium cells.
  Science 294: 864-867.

Wazawa, T. and Ueda, M. (2005).
  Total internal reflection fluorescence microscopy in single molecule nanobiology.
  Advances in Biochemical Engineering/Biotechnology. Microscopy Techniques.
  (Jens Rietdorf, ed.) SpringerVerlag, Special Volume: 95, 78-106.

Ueda, M., Miyanaga, Y. and Yanagida, T. (2005).
  Single-molecule analysis of chemotactic signaling mediated by cAMP receptor on living cells.
  Methods in signal transduction series: G protein-coupled receptors: Structure, Function and Ligand Screening.
  (Haga, T. and Takeda, S. eds.) 6, 197-218.

柴田達夫, 上田昌宏 (2005).
  細胞の反応ゆらぎとシグナル伝達,
  蛋白質・核酸・酵素 50: 1940-1947. （共立出版）

上田昌宏, 石井由晴, 柳田敏雄 (2002).
  生体ナノ分子機械の分子メカニズム
  応用物理 71: 1457-1466.

上田昌宏, 佐甲靖志 (2002).
  GPCR型走化性受容体の細胞内１分子可視化解析
  バイオイメージングでここまで理解る pp. 99-102. （羊土社）